satijalab / seurat
R toolkit for single cell genomics
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R toolkit for single cell genomics
R package for performing 2-sample MR using MR-Base database
R for data science: a book
Accurate sample inference from amplicon data with single nucleotide resolution
Make Complex Heatmaps
A curated list of awesome network analysis resources.
📊 A universal enrichment tool for interpreting omics data
A lightweight, cross-platform, portable, and easy-to-maintain LaTeX distribution based on TeX Live
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
Inferring CNV from Single-Cell RNA-Seq
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
Community-provided extensions to Seurat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
R toolkit for the analysis of single-cell chromatin data
caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models
An interactive graphing library for R
🎓 A collection of interactive courses for the swirl R package.
R package for detecting doublets in single-cell RNA sequencing data
Interfaces for HDF5-based Single Cell File Formats
A Wes Anderson color palette for R